Macquarie University, Sydney Macquarie University ResearchOnline

Ranganathan, Shoba

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A Workflow for mutation extraction and structure annotation 198 147 0
Gender-enriched transcripts in Haemonchus contortus - predicted functions and genetic interactions based on comparative analyses with Caenorhabditis elegans 319 329 0
A Novel multiplexed immunoassay identifies CEA, IL-8 and prolactin as prospective markers for Dukes' stages A-D colorectal cancers 586 596 92
Oesophagostomum dentatum - potential as a model for genomic studies of strongylid nematodes, with biotechnological prospects 173 145 0
A Proposed minimum skill set for university graduates to meet the informatics needs and challenges of the "-omics" era 65 50 0
SVM-based prediction of caspase substrate cleavage sites 90 155 77
Linking structural features of protein complexes and biological function 213 216 0
Functional annotation of the human chromosome 7 "missing" proteins : a bioinformatics approach 116 141 0
Combining ethnobotany and informatics to discover knowledge from data 219 153 1
The S-star trial bioinformatics course: An on-line learning success 70 64 0
Cloning and molecular characterization of the first aquatic hyaluronidase, SFHYA1, from the venom of stonefish (Synanceja horrida) 22 21 0
Discrete structural features among interface residue-level classes 208 270 77
Comparative genomic analysis of glycoylation pathways in yeast, plants and higher eukaryotes 138 80 0
In silico grouping of peptide/HLA class I complexes using structural interaction characteristics 31 20 0
Advanced in silico analysis of expressed sequence tag (EST) data for parasitic nematodes of major socio-economic importance - Fundamental insights toward biotechnological outcomes 107 97 0
In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda) : comparison of the automated ESTExplorer workflow platform with conventional database searches 53 47 0
Customary medicinal knowledge base (CMKb) 582 612 23
Network analysis of human protein location 87 148 0
Simple re-instantiation of small databases using cloud computing 500 612 124
GIW and InCoB are advancing bioinformatics in the Asia-Pacific 290 264 61
kappa-Hefutoxin1, a Novel Toxin from the Scorpion Heterometrus fulvipes with Unique Structure and Function 184 158 0
Accurate prediction of scorpion toxin functional properties from primary structures 107 98 0
The Transcriptome of Echinostoma caproni adults : further characterization of the secretome and identification of new potential drug targets 314 198 0
Molecular Modeling on the web 7 8 0
Extracting biomarker information applying natural language processing and machine learning 137 296 86
Structural diversity of biologically interesting datasets : a scaffold analysis approach 50 37 0
A common site within factor H SCR 7 responsible for binding heparin, C-reactive protein and streptococcal M protein 72 70 0
Editorial : Critical technologies for bioinformatics 56 47 4
In silico approach to screen compounds active against parasitic nematodes of major socio-economic importance 51 41 0
The Integrin αLβ2 Hybrid Domain Serves as a Link for the Propagation of Activation Signal from Its Stalk Regions to the I-like Domain 44 42 0
Multiple ligand binding sites on domain seven of human complement factor H 25 25 0
Transcriptome analysis reveals pathogenicity and evolutionary history of the pathogenic oomycete Pythium insidiosum 245 173 0
APBioNet: The Asia-Pacific Regional Consortium for Bioinformatics 16 16 0
A Comprehensive assessment of N-terminal signal peptides prediction methods 106 76 0
Helminth secretome database (HSD) : a collection of helminth excretory/secretory proteins predicted from expressed sequence tags (ESTs) 111 208 101
Modeling the structure of bound peptide ligands to major histocompatibility complex 92 79 0
SGS : splicing graph server 85 87 0
A Site for direct integrin αvβ6⋅uPAR interaction from structural modelling and docking 287 276 0
Generation and analysis of a highly complex Γ-retroviral vector integration site dataset from human CD34+ cells using Illumina next-generation sequencing 157 89 0
XdomView: protein domain and exon position visualization 38 38 0
CASVM : web server for SVM-based prediction of caspase substrates cleavage sites 61 47 0
SCORPION2 : a database for structure-function analysis of scorpion toxins 166 238 0
Protannotator : a semiautomated pipeline for chromosome-wise functional annotation of the "missing" human proteome 246 211 0
Advancing standards for bioinformatics activities : persistence, reproducibility, disambiguation and Minimum Information About a Bioinformatics investigation (MIABi) 161 254 86
TranSeqAnnotator : large-scale analysis of transcriptomic data 109 112 0
MGAlignIt: A web service for the alignment of mRNA/EST and genomic sequence 20 21 0
Medicinal plants of New South Wales, Australia 186 104 6
Systems proteomics view of the endogenous human claudin protein family 197 196 0
Massively parallel sequencing and analysis of the Necator americanus transcriptome 181 159 19
Bioinformatics research in the Asia Pacific: a 2007 update 17 17 0
Bioinformatics research in the Asia Pacific : a 2007 update 56 55 11
Advances in translational bioinformatics and population genomics in the Asia-Pacific 107 167 30
Functional and structural implications of the complement factor HY402H polymorphism associated with age-related macular degeneration 111 98 0
OMIA (Online Mendelian Inheritance in Animals) : an enhanced platform and integration into the Entrez search interface at NCBI 403 406 96
De novo peptide sequencing : deep mining of high-resolution mass spectrometry data 233 233 0
DEDB: a database of Drosophila melanogaster exons in splicing graph form 28 24 0
MPID-T₂ : a database for sequence-structure-function analyses of pMHC and TR/pMHC structures 61 46 0
InCoB2014 : Systems Biology update from the Asia-Pacific 61 68 7
Molecular similarity and diversity approaches in chemoinformatics 81 60 0
InCoB2013 introduces Systems Biology as a major conference theme 96 178 82
The hand, foot and mouth disease virus capsid: sequence analysis and prediction of antigenic sites from homology modelling 23 23 0
CMKb : a web-based prototype for integrating Australian Aboriginal customary medicinal plant knowledge 264 138 0
An Ethnobotanical study of medicinal plants used by the Yaegl Aboriginal community in northern New South Wales, Australia 602 1594 872
[Introduction] InCoB2014 : mining biological data from genomics for transforming industry and health 98 88 20
Immunoinformatics 24 23 0
A Comparative structural bioinformatics analysis of inherited mutations in β-D-Mannosidase across multiple species reveals a genotype-phenotype correlation 89 65 2
Characterization of the interaction between heterodimeric αvβ6 integrin and urokinase plasminogen activator receptor (uPAR) using functional proteomics 398 344 0
Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference 53 118 79
An Integrated Transcriptomics and Proteomics Analysis of the Secretome of the Helminth Pathogen Fasciola hepatica PROTEINS ASSOCIATED WITH INVASION AND INFECTION OF THE MAMMALIAN HOST 35 34 0
In silico prediction of immunogenic T cell epitopes for HLA-DQ8 126 145 114
Ecological niche modeling of customary medicinal plant species used by Australian Aborigines to identify species-rich and culturally valuable areas for conservation 170 110 0
Deep insights into Dictyocaulus viviparus transcriptomes provides unique prospects for new drug targets and disease intervention 266 199 0
APBioNet-transforming bioinformatics in the Asia-Pacific region 134 223 88
Structure-based clustering of major histocompatibility complex (MHC) proteins for broad-based T-cell vaccine design 108 99 0
Tandem duplication, circular permutation, molecular adaptation : how Solanaceae resist pests via inhibitors 43 32 10
Quest for missing proteins : update 2015 on Chromosome-Centric Human Proteome Project 2131 1845 0
Genome of the human hookworm Necator americanus 665 537 0
Whole-genome sequence of Schistosoma haematobium 242 237 0
Bioinformatics for immunomics 66 104 0
pDOCK : a new technique for rapid and accurate docking of peptide ligands to major histocompatibility complexes 148 91 21
Unlocking the puzzling biology of the Black Périgord truffle Tuber melanosporum 224 225 1
InCoB2012 Conference : from biological data to knowledge to technological breakthroughs 108 99 38
The Asia-Pacific Regional Perspective on Bioinformatics 19 19 0
Editorship : BMC genomics 58 70 0
MVC Architecture in Bioinformatics web applications and its Java implementation 72 68 0
MPID-T2: a database for sequence–structure–function analyses of pMHC and TR/pMHC structures 379 383 12
Ascaris suum draft genome 229 147 0
Understanding TR binding to pMHC complexes : how does a TR scan many pMHC complexes yet preferentially bind to one 64 80 59
Establishing bioinformatics research in the Asia Pacific 186 161 28
Modeling the bound conformation of Permphigus Vulgaris-associated peptides to MHC Class II DR and DQ Alleles 185 152 21
Bioinformatics education : perspectives and challenges 35 52 62
In silico secretome analysis approach for next generation sequencing transcriptomic data 50 42 0
A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing 169 136 0
MPID-T : database for sequence-structure-function information on T-cell receptor/peptide/MHC interactions 258 324 0
Towards BioDBcore : a community-defined information specification for biological databases 612 904 111
The Transcriptome analysis of strongyloides stercoralis L3i larvae reveals targets for intervention in a neglected disease 207 291 141
An Analysis of the transcriptome of Teladorsagia circumcincta : its biological and biotechnological implications 24 95 1
Computer-aided vaccine design 255 172 2
Prediction of HLA-DQ3.2ß Ligands : evidence of multiple registers in class II binding peptides 74 97 0
Delineation of modular proteins: Domain boundary prediction from sequence information 20 20 0
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