Macquarie University, Sydney Macquarie University ResearchOnline

Ranganathan, Shoba

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A Workflow for mutation extraction and structure annotation 247 170 0
Gender-enriched transcripts in Haemonchus contortus - predicted functions and genetic interactions based on comparative analyses with Caenorhabditis elegans 327 337 0
A Novel multiplexed immunoassay identifies CEA, IL-8 and prolactin as prospective markers for Dukes' stages A-D colorectal cancers 616 661 128
Oesophagostomum dentatum - potential as a model for genomic studies of strongylid nematodes, with biotechnological prospects 194 166 0
A Proposed minimum skill set for university graduates to meet the informatics needs and challenges of the "-omics" era 75 60 0
SVM-based prediction of caspase substrate cleavage sites 112 185 85
Linking structural features of protein complexes and biological function 235 238 0
Functional annotation of the human chromosome 7 "missing" proteins : a bioinformatics approach 142 167 0
Combining ethnobotany and informatics to discover knowledge from data 266 200 1
The S-star trial bioinformatics course: An on-line learning success 75 69 0
Cloning and molecular characterization of the first aquatic hyaluronidase, SFHYA1, from the venom of stonefish (Synanceja horrida) 23 22 0
Discrete structural features among interface residue-level classes 225 327 117
Comparative genomic analysis of glycoylation pathways in yeast, plants and higher eukaryotes 165 85 0
In silico grouping of peptide/HLA class I complexes using structural interaction characteristics 32 21 0
Advanced in silico analysis of expressed sequence tag (EST) data for parasitic nematodes of major socio-economic importance - Fundamental insights toward biotechnological outcomes 116 102 0
In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda) : comparison of the automated ESTExplorer workflow platform with conventional database searches 60 54 0
Customary medicinal knowledge base (CMKb) 698 728 23
Network analysis of human protein location 107 168 0
Simple re-instantiation of small databases using cloud computing 522 667 161
GIW and InCoB are advancing bioinformatics in the Asia-Pacific 333 310 74
kappa-Hefutoxin1, a Novel Toxin from the Scorpion Heterometrus fulvipes with Unique Structure and Function 186 160 0
Accurate prediction of scorpion toxin functional properties from primary structures 114 105 0
The Transcriptome of Echinostoma caproni adults : further characterization of the secretome and identification of new potential drug targets 359 243 0
Molecular Modeling on the web 8 9 0
Extracting biomarker information applying natural language processing and machine learning 142 328 113
Structural diversity of biologically interesting datasets : a scaffold analysis approach 52 39 0
A common site within factor H SCR 7 responsible for binding heparin, C-reactive protein and streptococcal M protein 75 73 0
Editorial : Critical technologies for bioinformatics 73 64 4
In silico approach to screen compounds active against parasitic nematodes of major socio-economic importance 56 46 0
The Integrin αLβ2 Hybrid Domain Serves as a Link for the Propagation of Activation Signal from Its Stalk Regions to the I-like Domain 49 47 0
Multiple ligand binding sites on domain seven of human complement factor H 27 27 0
Transcriptome analysis reveals pathogenicity and evolutionary history of the pathogenic oomycete Pythium insidiosum 246 174 0
APBioNet: The Asia-Pacific Regional Consortium for Bioinformatics 17 17 0
A Comprehensive assessment of N-terminal signal peptides prediction methods 121 91 0
Helminth secretome database (HSD) : a collection of helminth excretory/secretory proteins predicted from expressed sequence tags (ESTs) 117 249 136
Modeling the structure of bound peptide ligands to major histocompatibility complex 102 83 0
SGS : splicing graph server 89 91 0
A Site for direct integrin αvβ6⋅uPAR interaction from structural modelling and docking 319 308 0
Generation and analysis of a highly complex Γ-retroviral vector integration site dataset from human CD34+ cells using Illumina next-generation sequencing 166 98 0
XdomView: protein domain and exon position visualization 43 43 0
CASVM : web server for SVM-based prediction of caspase substrates cleavage sites 82 67 0
SCORPION2 : a database for structure-function analysis of scorpion toxins 177 249 0
Protannotator : a semiautomated pipeline for chromosome-wise functional annotation of the "missing" human proteome 271 236 0
Advancing standards for bioinformatics activities : persistence, reproducibility, disambiguation and Minimum Information About a Bioinformatics investigation (MIABi) 184 284 93
TranSeqAnnotator : large-scale analysis of transcriptomic data 113 116 0
MGAlignIt: A web service for the alignment of mRNA/EST and genomic sequence 23 24 0
Medicinal plants of New South Wales, Australia 237 155 6
Systems proteomics view of the endogenous human claudin protein family 219 218 0
Massively parallel sequencing and analysis of the Necator americanus transcriptome 199 182 25
Bioinformatics research in the Asia Pacific: a 2007 update 20 20 0
Bioinformatics research in the Asia Pacific : a 2007 update 60 62 14
Advances in translational bioinformatics and population genomics in the Asia-Pacific 124 204 50
Functional and structural implications of the complement factor HY402H polymorphism associated with age-related macular degeneration 120 105 0
OMIA (Online Mendelian Inheritance in Animals) : an enhanced platform and integration into the Entrez search interface at NCBI 454 487 126
De novo peptide sequencing : deep mining of high-resolution mass spectrometry data 317 315 0
DEDB: a database of Drosophila melanogaster exons in splicing graph form 29 25 0
MPID-T₂ : a database for sequence-structure-function analyses of pMHC and TR/pMHC structures 66 51 0
InCoB2014 : Systems Biology update from the Asia-Pacific 70 84 14
Molecular similarity and diversity approaches in chemoinformatics 87 66 0
InCoB2013 introduces Systems Biology as a major conference theme 120 236 116
The hand, foot and mouth disease virus capsid: sequence analysis and prediction of antigenic sites from homology modelling 26 26 0
CMKb : a web-based prototype for integrating Australian Aboriginal customary medicinal plant knowledge 296 170 0
An Ethnobotanical study of medicinal plants used by the Yaegl Aboriginal community in northern New South Wales, Australia 656 1702 927
[Introduction] InCoB2014 : mining biological data from genomics for transforming industry and health 114 106 23
Immunoinformatics 31 30 0
A Comparative structural bioinformatics analysis of inherited mutations in β-D-Mannosidase across multiple species reveals a genotype-phenotype correlation 106 82 2
Characterization of the interaction between heterodimeric αvβ6 integrin and urokinase plasminogen activator receptor (uPAR) using functional proteomics 442 388 0
Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference 68 161 107
An Integrated Transcriptomics and Proteomics Analysis of the Secretome of the Helminth Pathogen Fasciola hepatica PROTEINS ASSOCIATED WITH INVASION AND INFECTION OF THE MAMMALIAN HOST 43 42 0
In silico prediction of immunogenic T cell epitopes for HLA-DQ8 134 181 143
Ecological niche modeling of customary medicinal plant species used by Australian Aborigines to identify species-rich and culturally valuable areas for conservation 190 130 0
Deep insights into Dictyocaulus viviparus transcriptomes provides unique prospects for new drug targets and disease intervention 281 214 0
APBioNet-transforming bioinformatics in the Asia-Pacific region 155 282 128
Structure-based clustering of major histocompatibility complex (MHC) proteins for broad-based T-cell vaccine design 114 103 0
Tandem duplication, circular permutation, molecular adaptation : how Solanaceae resist pests via inhibitors 45 38 15
Quest for missing proteins : update 2015 on Chromosome-Centric Human Proteome Project 2219 1933 0
Genome of the human hookworm Necator americanus 700 572 0
Whole-genome sequence of Schistosoma haematobium 251 246 0
Bioinformatics for immunomics 74 112 0
pDOCK : a new technique for rapid and accurate docking of peptide ligands to major histocompatibility complexes 156 125 47
Unlocking the puzzling biology of the Black Périgord truffle Tuber melanosporum 242 243 1
InCoB2012 Conference : from biological data to knowledge to technological breakthroughs 125 134 56
The Asia-Pacific Regional Perspective on Bioinformatics 21 21 0
Editorship : BMC genomics 59 71 0
MVC Architecture in Bioinformatics web applications and its Java implementation 102 98 0
MPID-T2: a database for sequence–structure–function analyses of pMHC and TR/pMHC structures 408 412 12
Ascaris suum draft genome 244 162 0
Understanding TR binding to pMHC complexes : how does a TR scan many pMHC complexes yet preferentially bind to one 68 86 61
Establishing bioinformatics research in the Asia Pacific 197 195 52
Modeling the bound conformation of Permphigus Vulgaris-associated peptides to MHC Class II DR and DQ Alleles 192 161 24
Bioinformatics education : perspectives and challenges 40 73 78
In silico secretome analysis approach for next generation sequencing transcriptomic data 54 46 0
A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing 197 164 0
MPID-T : database for sequence-structure-function information on T-cell receptor/peptide/MHC interactions 272 338 0
Towards BioDBcore : a community-defined information specification for biological databases 681 997 147
The Transcriptome analysis of strongyloides stercoralis L3i larvae reveals targets for intervention in a neglected disease 223 343 177
An Analysis of the transcriptome of Teladorsagia circumcincta : its biological and biotechnological implications 30 101 1
Computer-aided vaccine design 278 195 2
Prediction of HLA-DQ3.2ß Ligands : evidence of multiple registers in class II binding peptides 77 100 0
Delineation of modular proteins: Domain boundary prediction from sequence information 21 21 0
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