Macquarie University, Sydney Macquarie University ResearchOnline

Ranganathan, Shoba

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A Workflow for mutation extraction and structure annotation 340 243 0
Gender-enriched transcripts in Haemonchus contortus - predicted functions and genetic interactions based on comparative analyses with Caenorhabditis elegans 417 427 0
A Novel multiplexed immunoassay identifies CEA, IL-8 and prolactin as prospective markers for Dukes' stages A-D colorectal cancers 767 823 142
Oesophagostomum dentatum - potential as a model for genomic studies of strongylid nematodes, with biotechnological prospects 270 242 0
A Proposed minimum skill set for university graduates to meet the informatics needs and challenges of the "-omics" era 127 112 0
SVM-based prediction of caspase substrate cleavage sites 147 227 95
Linking structural features of protein complexes and biological function 315 318 0
Functional annotation of the human chromosome 7 "missing" proteins : a bioinformatics approach 256 281 0
Combining ethnobotany and informatics to discover knowledge from data 342 267 1
The S-star trial bioinformatics course: An on-line learning success 91 85 0
Cloning and molecular characterization of the first aquatic hyaluronidase, SFHYA1, from the venom of stonefish (Synanceja horrida) 31 30 0
Discrete structural features among interface residue-level classes 300 421 138
Comparative genomic analysis of glycoylation pathways in yeast, plants and higher eukaryotes 197 109 0
In silico grouping of peptide/HLA class I complexes using structural interaction characteristics 43 32 0
Advanced in silico analysis of expressed sequence tag (EST) data for parasitic nematodes of major socio-economic importance - Fundamental insights toward biotechnological outcomes 133 119 0
In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda) : comparison of the automated ESTExplorer workflow platform with conventional database searches 102 96 0
Customary medicinal knowledge base (CMKb) 847 877 24
Network analysis of human protein location 145 206 0
Simple re-instantiation of small databases using cloud computing 635 795 180
GIW and InCoB are advancing bioinformatics in the Asia-Pacific 425 412 88
kappa-Hefutoxin1, a Novel Toxin from the Scorpion Heterometrus fulvipes with Unique Structure and Function 199 173 0
Accurate prediction of scorpion toxin functional properties from primary structures 193 184 0
The Transcriptome of Echinostoma caproni adults : further characterization of the secretome and identification of new potential drug targets 404 288 0
Molecular Modeling on the web 12 13 0
Extracting biomarker information applying natural language processing and machine learning 164 365 131
Structural diversity of biologically interesting datasets : a scaffold analysis approach 68 55 0
A common site within factor H SCR 7 responsible for binding heparin, C-reactive protein and streptococcal M protein 110 108 0
Editorial : Critical technologies for bioinformatics 78 69 4
In silico approach to screen compounds active against parasitic nematodes of major socio-economic importance 82 72 0
The Integrin αLβ2 Hybrid Domain Serves as a Link for the Propagation of Activation Signal from Its Stalk Regions to the I-like Domain 65 63 0
Multiple ligand binding sites on domain seven of human complement factor H 35 35 0
Transcriptome analysis reveals pathogenicity and evolutionary history of the pathogenic oomycete Pythium insidiosum 278 193 0
APBioNet: The Asia-Pacific Regional Consortium for Bioinformatics 22 22 0
A Comprehensive assessment of N-terminal signal peptides prediction methods 172 142 0
Helminth secretome database (HSD) : a collection of helminth excretory/secretory proteins predicted from expressed sequence tags (ESTs) 144 312 174
Modeling the structure of bound peptide ligands to major histocompatibility complex 122 103 0
SGS : splicing graph server 106 107 0
A Site for direct integrin αvβ6⋅uPAR interaction from structural modelling and docking 454 443 0
Generation and analysis of a highly complex Γ-retroviral vector integration site dataset from human CD34+ cells using Illumina next-generation sequencing 193 125 0
XdomView: protein domain and exon position visualization 55 55 0
CASVM : web server for SVM-based prediction of caspase substrates cleavage sites 106 91 0
SCORPION2 : a database for structure-function analysis of scorpion toxins 245 299 0
Protannotator : a semiautomated pipeline for chromosome-wise functional annotation of the "missing" human proteome 327 292 0
Advancing standards for bioinformatics activities : persistence, reproducibility, disambiguation and Minimum Information About a Bioinformatics investigation (MIABi) 207 316 104
TranSeqAnnotator : large-scale analysis of transcriptomic data 141 143 0
MGAlignIt: A web service for the alignment of mRNA/EST and genomic sequence 32 33 0
Medicinal plants of New South Wales, Australia 305 220 6
Systems proteomics view of the endogenous human claudin protein family 352 322 0
Massively parallel sequencing and analysis of the Necator americanus transcriptome 271 263 38
Bioinformatics research in the Asia Pacific: a 2007 update 28 28 0
Bioinformatics research in the Asia Pacific : a 2007 update 81 89 25
Advances in translational bioinformatics and population genomics in the Asia-Pacific 194 338 116
Functional and structural implications of the complement factor HY402H polymorphism associated with age-related macular degeneration 132 117 0
OMIA (Online Mendelian Inheritance in Animals) : an enhanced platform and integration into the Entrez search interface at NCBI 545 590 145
De novo peptide sequencing : deep mining of high-resolution mass spectrometry data 558 556 0
DEDB: a database of Drosophila melanogaster exons in splicing graph form 35 31 0
MPID-T₂ : a database for sequence-structure-function analyses of pMHC and TR/pMHC structures 92 77 0
InCoB2014 : Systems Biology update from the Asia-Pacific 105 124 21
Molecular similarity and diversity approaches in chemoinformatics 142 121 0
InCoB2013 introduces Systems Biology as a major conference theme 133 259 129
The hand, foot and mouth disease virus capsid: sequence analysis and prediction of antigenic sites from homology modelling 37 34 0
CMKb : a web-based prototype for integrating Australian Aboriginal customary medicinal plant knowledge 368 240 0
An Ethnobotanical study of medicinal plants used by the Yaegl Aboriginal community in northern New South Wales, Australia 759 1867 993
[Introduction] InCoB2014 : mining biological data from genomics for transforming industry and health 163 168 38
Immunoinformatics 59 58 0
A Comparative structural bioinformatics analysis of inherited mutations in β-D-Mannosidase across multiple species reveals a genotype-phenotype correlation 189 165 2
Characterization of the interaction between heterodimeric αvβ6 integrin and urokinase plasminogen activator receptor (uPAR) using functional proteomics 548 494 0
Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference 106 242 152
An Integrated Transcriptomics and Proteomics Analysis of the Secretome of the Helminth Pathogen Fasciola hepatica PROTEINS ASSOCIATED WITH INVASION AND INFECTION OF THE MAMMALIAN HOST 54 53 0
In silico prediction of immunogenic T cell epitopes for HLA-DQ8 158 223 164
Ecological niche modeling of customary medicinal plant species used by Australian Aborigines to identify species-rich and culturally valuable areas for conservation 246 186 0
Deep insights into Dictyocaulus viviparus transcriptomes provides unique prospects for new drug targets and disease intervention 384 315 0
APBioNet-transforming bioinformatics in the Asia-Pacific region 190 333 148
Structure-based clustering of major histocompatibility complex (MHC) proteins for broad-based T-cell vaccine design 131 120 0
Tandem duplication, circular permutation, molecular adaptation : how Solanaceae resist pests via inhibitors 63 65 26
Quest for missing proteins : update 2015 on Chromosome-Centric Human Proteome Project 2557 2255 0
Genome of the human hookworm Necator americanus 933 804 0
Whole-genome sequence of Schistosoma haematobium 287 282 0
Bioinformatics for immunomics 113 149 0
pDOCK : a new technique for rapid and accurate docking of peptide ligands to major histocompatibility complexes 182 161 59
Unlocking the puzzling biology of the Black Périgord truffle Tuber melanosporum 269 270 1
InCoB2012 Conference : from biological data to knowledge to technological breakthroughs 181 201 69
The Asia-Pacific Regional Perspective on Bioinformatics 26 26 0
Editorship : BMC genomics 75 87 0
MVC Architecture in Bioinformatics web applications and its Java implementation 112 108 0
MPID-T2: a database for sequence–structure–function analyses of pMHC and TR/pMHC structures 579 588 17
Ascaris suum draft genome 343 247 0
Understanding TR binding to pMHC complexes : how does a TR scan many pMHC complexes yet preferentially bind to one 83 115 77
Establishing bioinformatics research in the Asia Pacific 268 261 60
Modeling the bound conformation of Permphigus Vulgaris-associated peptides to MHC Class II DR and DQ Alleles 225 204 38
Bioinformatics education : perspectives and challenges 62 108 93
In silico secretome analysis approach for next generation sequencing transcriptomic data 71 63 0
A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing 310 277 0
MPID-T : database for sequence-structure-function information on T-cell receptor/peptide/MHC interactions 325 391 0
Towards BioDBcore : a community-defined information specification for biological databases 829 1163 170
The Transcriptome analysis of strongyloides stercoralis L3i larvae reveals targets for intervention in a neglected disease 284 482 257
An Analysis of the transcriptome of Teladorsagia circumcincta : its biological and biotechnological implications 54 125 1
Computer-aided vaccine design 335 251 2
Prediction of HLA-DQ3.2ß Ligands : evidence of multiple registers in class II binding peptides 98 121 0
Delineation of modular proteins: Domain boundary prediction from sequence information 27 27 0
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