Macquarie University, Sydney Macquarie University ResearchOnline

Ranganathan, Shoba

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A Workflow for mutation extraction and structure annotation 359 261 0
Gender-enriched transcripts in Haemonchus contortus - predicted functions and genetic interactions based on comparative analyses with Caenorhabditis elegans 614 624 0
A Novel multiplexed immunoassay identifies CEA, IL-8 and prolactin as prospective markers for Dukes' stages A-D colorectal cancers 1038 1063 144
Oesophagostomum dentatum - potential as a model for genomic studies of strongylid nematodes, with biotechnological prospects 303 272 0
A Proposed minimum skill set for university graduates to meet the informatics needs and challenges of the "-omics" era 146 131 0
SVM-based prediction of caspase substrate cleavage sites 159 243 99
Linking structural features of protein complexes and biological function 353 355 0
Functional annotation of the human chromosome 7 "missing" proteins : a bioinformatics approach 312 337 0
Combining ethnobotany and informatics to discover knowledge from data 355 280 1
The S-star trial bioinformatics course: An on-line learning success 103 96 0
Cloning and molecular characterization of the first aquatic hyaluronidase, SFHYA1, from the venom of stonefish (Synanceja horrida) 37 35 0
Discrete structural features among interface residue-level classes 334 468 151
Comparative genomic analysis of glycoylation pathways in yeast, plants and higher eukaryotes 201 113 0
In silico grouping of peptide/HLA class I complexes using structural interaction characteristics 44 33 0
Advanced in silico analysis of expressed sequence tag (EST) data for parasitic nematodes of major socio-economic importance - Fundamental insights toward biotechnological outcomes 152 137 0
In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda) : comparison of the automated ESTExplorer workflow platform with conventional database searches 110 104 0
Customary medicinal knowledge base (CMKb) 947 953 29
Network analysis of human protein location 149 210 0
Simple re-instantiation of small databases using cloud computing 693 851 181
GIW and InCoB are advancing bioinformatics in the Asia-Pacific 508 495 91
kappa-Hefutoxin1, a Novel Toxin from the Scorpion Heterometrus fulvipes with Unique Structure and Function 239 209 0
Accurate prediction of scorpion toxin functional properties from primary structures 236 219 0
The Transcriptome of Echinostoma caproni adults : further characterization of the secretome and identification of new potential drug targets 481 365 0
Molecular Modeling on the web 12 13 0
Extracting biomarker information applying natural language processing and machine learning 174 380 136
Structural diversity of biologically interesting datasets : a scaffold analysis approach 70 57 0
A common site within factor H SCR 7 responsible for binding heparin, C-reactive protein and streptococcal M protein 123 120 0
Editorial : Critical technologies for bioinformatics 78 69 4
In silico approach to screen compounds active against parasitic nematodes of major socio-economic importance 87 77 0
The Integrin αLβ2 Hybrid Domain Serves as a Link for the Propagation of Activation Signal from Its Stalk Regions to the I-like Domain 68 66 0
Multiple ligand binding sites on domain seven of human complement factor H 40 40 0
Transcriptome analysis reveals pathogenicity and evolutionary history of the pathogenic oomycete Pythium insidiosum 336 251 0
APBioNet: The Asia-Pacific Regional Consortium for Bioinformatics 24 24 0
A Comprehensive assessment of N-terminal signal peptides prediction methods 188 158 0
Helminth secretome database (HSD) : a collection of helminth excretory/secretory proteins predicted from expressed sequence tags (ESTs) 146 320 180
Modeling the structure of bound peptide ligands to major histocompatibility complex 123 104 0
SGS : splicing graph server 108 109 0
A Site for direct integrin αvβ6⋅uPAR interaction from structural modelling and docking 567 551 0
Generation and analysis of a highly complex Γ-retroviral vector integration site dataset from human CD34+ cells using Illumina next-generation sequencing 215 136 0
XdomView: protein domain and exon position visualization 56 56 0
CASVM : web server for SVM-based prediction of caspase substrates cleavage sites 114 99 0
SCORPION2 : a database for structure-function analysis of scorpion toxins 265 318 0
Protannotator : a semiautomated pipeline for chromosome-wise functional annotation of the "missing" human proteome 376 340 0
Advancing standards for bioinformatics activities : persistence, reproducibility, disambiguation and Minimum Information About a Bioinformatics investigation (MIABi) 222 333 106
TranSeqAnnotator : large-scale analysis of transcriptomic data 150 152 0
MGAlignIt: A web service for the alignment of mRNA/EST and genomic sequence 37 38 0
Medicinal plants of New South Wales, Australia 322 237 6
Systems proteomics view of the endogenous human claudin protein family 399 362 0
Massively parallel sequencing and analysis of the Necator americanus transcriptome 303 296 39
Bioinformatics research in the Asia Pacific: a 2007 update 29 29 0
Bioinformatics research in the Asia Pacific : a 2007 update 88 96 26
Advances in translational bioinformatics and population genomics in the Asia-Pacific 219 365 118
Functional and structural implications of the complement factor HY402H polymorphism associated with age-related macular degeneration 143 128 0
OMIA (Online Mendelian Inheritance in Animals) : an enhanced platform and integration into the Entrez search interface at NCBI 617 658 147
De novo peptide sequencing : deep mining of high-resolution mass spectrometry data 595 586 0
DEDB: a database of Drosophila melanogaster exons in splicing graph form 39 34 0
MPID-T₂ : a database for sequence-structure-function analyses of pMHC and TR/pMHC structures 103 88 0
InCoB2014 : Systems Biology update from the Asia-Pacific 120 139 21
Molecular similarity and diversity approaches in chemoinformatics 156 135 0
InCoB2013 introduces Systems Biology as a major conference theme 142 268 130
The hand, foot and mouth disease virus capsid: sequence analysis and prediction of antigenic sites from homology modelling 52 46 0
CMKb : a web-based prototype for integrating Australian Aboriginal customary medicinal plant knowledge 382 253 0
An Ethnobotanical study of medicinal plants used by the Yaegl Aboriginal community in northern New South Wales, Australia 804 1921 1002
[Introduction] InCoB2014 : mining biological data from genomics for transforming industry and health 185 193 41
Immunoinformatics 74 73 0
A Comparative structural bioinformatics analysis of inherited mutations in β-D-Mannosidase across multiple species reveals a genotype-phenotype correlation 206 182 2
Characterization of the interaction between heterodimeric αvβ6 integrin and urokinase plasminogen activator receptor (uPAR) using functional proteomics 888 796 0
Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference 122 265 159
An Integrated Transcriptomics and Proteomics Analysis of the Secretome of the Helminth Pathogen Fasciola hepatica PROTEINS ASSOCIATED WITH INVASION AND INFECTION OF THE MAMMALIAN HOST 55 54 0
In silico prediction of immunogenic T cell epitopes for HLA-DQ8 163 235 171
Ecological niche modeling of customary medicinal plant species used by Australian Aborigines to identify species-rich and culturally valuable areas for conservation 257 197 0
Deep insights into Dictyocaulus viviparus transcriptomes provides unique prospects for new drug targets and disease intervention 430 358 0
APBioNet-transforming bioinformatics in the Asia-Pacific region 204 348 150
Structure-based clustering of major histocompatibility complex (MHC) proteins for broad-based T-cell vaccine design 139 128 0
Tandem duplication, circular permutation, molecular adaptation : how Solanaceae resist pests via inhibitors 74 74 27
Quest for missing proteins : update 2015 on Chromosome-Centric Human Proteome Project 3125 2651 0
Genome of the human hookworm Necator americanus 1118 936 0
Whole-genome sequence of Schistosoma haematobium 315 310 0
Bioinformatics for immunomics 122 158 0
pDOCK : a new technique for rapid and accurate docking of peptide ligands to major histocompatibility complexes 189 170 61
Unlocking the puzzling biology of the Black Périgord truffle Tuber melanosporum 313 311 1
InCoB2012 Conference : from biological data to knowledge to technological breakthroughs 204 220 70
The Asia-Pacific Regional Perspective on Bioinformatics 28 28 0
Editorship : BMC genomics 77 89 0
MVC Architecture in Bioinformatics web applications and its Java implementation 114 110 0
MPID-T2: a database for sequence–structure–function analyses of pMHC and TR/pMHC structures 639 645 18
Ascaris suum draft genome 380 284 0
Understanding TR binding to pMHC complexes : how does a TR scan many pMHC complexes yet preferentially bind to one 84 117 78
Establishing bioinformatics research in the Asia Pacific 286 280 61
Modeling the bound conformation of Permphigus Vulgaris-associated peptides to MHC Class II DR and DQ Alleles 245 222 39
Bioinformatics education : perspectives and challenges 67 114 94
In silico secretome analysis approach for next generation sequencing transcriptomic data 75 67 0
A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing 348 313 0
MPID-T : database for sequence-structure-function information on T-cell receptor/peptide/MHC interactions 339 405 0
Towards BioDBcore : a community-defined information specification for biological databases 1054 1376 174
The Transcriptome analysis of strongyloides stercoralis L3i larvae reveals targets for intervention in a neglected disease 315 514 260
An Analysis of the transcriptome of Teladorsagia circumcincta : its biological and biotechnological implications 63 134 1
Computer-aided vaccine design 345 261 2
Prediction of HLA-DQ3.2ß Ligands : evidence of multiple registers in class II binding peptides 127 150 0
Delineation of modular proteins: Domain boundary prediction from sequence information 29 29 0
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