Macquarie University, Sydney Macquarie University ResearchOnline

Ranganathan, Shoba

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A Workflow for mutation extraction and structure annotation 265 188 0
Gender-enriched transcripts in Haemonchus contortus - predicted functions and genetic interactions based on comparative analyses with Caenorhabditis elegans 337 347 0
A Novel multiplexed immunoassay identifies CEA, IL-8 and prolactin as prospective markers for Dukes' stages A-D colorectal cancers 680 730 134
Oesophagostomum dentatum - potential as a model for genomic studies of strongylid nematodes, with biotechnological prospects 209 181 0
A Proposed minimum skill set for university graduates to meet the informatics needs and challenges of the "-omics" era 91 76 0
SVM-based prediction of caspase substrate cleavage sites 123 197 87
Linking structural features of protein complexes and biological function 248 251 0
Functional annotation of the human chromosome 7 "missing" proteins : a bioinformatics approach 171 196 0
Combining ethnobotany and informatics to discover knowledge from data 291 225 1
The S-star trial bioinformatics course: An on-line learning success 78 72 0
Cloning and molecular characterization of the first aquatic hyaluronidase, SFHYA1, from the venom of stonefish (Synanceja horrida) 27 26 0
Discrete structural features among interface residue-level classes 233 342 124
Comparative genomic analysis of glycoylation pathways in yeast, plants and higher eukaryotes 170 90 0
In silico grouping of peptide/HLA class I complexes using structural interaction characteristics 36 25 0
Advanced in silico analysis of expressed sequence tag (EST) data for parasitic nematodes of major socio-economic importance - Fundamental insights toward biotechnological outcomes 122 108 0
In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda) : comparison of the automated ESTExplorer workflow platform with conventional database searches 74 68 0
Customary medicinal knowledge base (CMKb) 744 773 23
Network analysis of human protein location 113 174 0
Simple re-instantiation of small databases using cloud computing 558 710 170
GIW and InCoB are advancing bioinformatics in the Asia-Pacific 377 357 79
kappa-Hefutoxin1, a Novel Toxin from the Scorpion Heterometrus fulvipes with Unique Structure and Function 187 161 0
Accurate prediction of scorpion toxin functional properties from primary structures 135 126 0
The Transcriptome of Echinostoma caproni adults : further characterization of the secretome and identification of new potential drug targets 373 257 0
Molecular Modeling on the web 8 9 0
Extracting biomarker information applying natural language processing and machine learning 148 337 117
Structural diversity of biologically interesting datasets : a scaffold analysis approach 57 44 0
A common site within factor H SCR 7 responsible for binding heparin, C-reactive protein and streptococcal M protein 87 85 0
Editorial : Critical technologies for bioinformatics 74 65 4
In silico approach to screen compounds active against parasitic nematodes of major socio-economic importance 66 56 0
The Integrin αLβ2 Hybrid Domain Serves as a Link for the Propagation of Activation Signal from Its Stalk Regions to the I-like Domain 52 50 0
Multiple ligand binding sites on domain seven of human complement factor H 29 29 0
Transcriptome analysis reveals pathogenicity and evolutionary history of the pathogenic oomycete Pythium insidiosum 250 178 0
APBioNet: The Asia-Pacific Regional Consortium for Bioinformatics 18 18 0
A Comprehensive assessment of N-terminal signal peptides prediction methods 134 104 0
Helminth secretome database (HSD) : a collection of helminth excretory/secretory proteins predicted from expressed sequence tags (ESTs) 127 271 148
Modeling the structure of bound peptide ligands to major histocompatibility complex 103 84 0
SGS : splicing graph server 97 98 0
A Site for direct integrin αvβ6⋅uPAR interaction from structural modelling and docking 338 327 0
Generation and analysis of a highly complex Γ-retroviral vector integration site dataset from human CD34+ cells using Illumina next-generation sequencing 173 105 0
XdomView: protein domain and exon position visualization 45 45 0
CASVM : web server for SVM-based prediction of caspase substrates cleavage sites 91 76 0
SCORPION2 : a database for structure-function analysis of scorpion toxins 183 255 0
Protannotator : a semiautomated pipeline for chromosome-wise functional annotation of the "missing" human proteome 279 244 0
Advancing standards for bioinformatics activities : persistence, reproducibility, disambiguation and Minimum Information About a Bioinformatics investigation (MIABi) 188 292 97
TranSeqAnnotator : large-scale analysis of transcriptomic data 118 121 0
MGAlignIt: A web service for the alignment of mRNA/EST and genomic sequence 23 24 0
Medicinal plants of New South Wales, Australia 252 170 6
Systems proteomics view of the endogenous human claudin protein family 238 237 0
Massively parallel sequencing and analysis of the Necator americanus transcriptome 217 203 28
Bioinformatics research in the Asia Pacific: a 2007 update 21 21 0
Bioinformatics research in the Asia Pacific : a 2007 update 63 69 18
Advances in translational bioinformatics and population genomics in the Asia-Pacific 144 281 107
Functional and structural implications of the complement factor HY402H polymorphism associated with age-related macular degeneration 122 107 0
OMIA (Online Mendelian Inheritance in Animals) : an enhanced platform and integration into the Entrez search interface at NCBI 501 536 132
De novo peptide sequencing : deep mining of high-resolution mass spectrometry data 370 368 0
DEDB: a database of Drosophila melanogaster exons in splicing graph form 31 27 0
MPID-T₂ : a database for sequence-structure-function analyses of pMHC and TR/pMHC structures 73 58 0
InCoB2014 : Systems Biology update from the Asia-Pacific 75 91 16
Molecular similarity and diversity approaches in chemoinformatics 101 80 0
InCoB2013 introduces Systems Biology as a major conference theme 122 244 123
The hand, foot and mouth disease virus capsid: sequence analysis and prediction of antigenic sites from homology modelling 27 27 0
CMKb : a web-based prototype for integrating Australian Aboriginal customary medicinal plant knowledge 310 184 0
An Ethnobotanical study of medicinal plants used by the Yaegl Aboriginal community in northern New South Wales, Australia 676 1749 954
[Introduction] InCoB2014 : mining biological data from genomics for transforming industry and health 121 118 28
Immunoinformatics 36 35 0
A Comparative structural bioinformatics analysis of inherited mutations in β-D-Mannosidase across multiple species reveals a genotype-phenotype correlation 118 94 2
Characterization of the interaction between heterodimeric αvβ6 integrin and urokinase plasminogen activator receptor (uPAR) using functional proteomics 447 393 0
Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference 77 187 124
An Integrated Transcriptomics and Proteomics Analysis of the Secretome of the Helminth Pathogen Fasciola hepatica PROTEINS ASSOCIATED WITH INVASION AND INFECTION OF THE MAMMALIAN HOST 44 43 0
In silico prediction of immunogenic T cell epitopes for HLA-DQ8 141 197 153
Ecological niche modeling of customary medicinal plant species used by Australian Aborigines to identify species-rich and culturally valuable areas for conservation 209 149 0
Deep insights into Dictyocaulus viviparus transcriptomes provides unique prospects for new drug targets and disease intervention 299 232 0
APBioNet-transforming bioinformatics in the Asia-Pacific region 165 299 136
Structure-based clustering of major histocompatibility complex (MHC) proteins for broad-based T-cell vaccine design 115 104 0
Tandem duplication, circular permutation, molecular adaptation : how Solanaceae resist pests via inhibitors 47 44 19
Quest for missing proteins : update 2015 on Chromosome-Centric Human Proteome Project 2291 1989 0
Genome of the human hookworm Necator americanus 726 597 0
Whole-genome sequence of Schistosoma haematobium 259 254 0
Bioinformatics for immunomics 88 124 0
pDOCK : a new technique for rapid and accurate docking of peptide ligands to major histocompatibility complexes 161 135 52
Unlocking the puzzling biology of the Black Périgord truffle Tuber melanosporum 251 252 1
InCoB2012 Conference : from biological data to knowledge to technological breakthroughs 139 153 61
The Asia-Pacific Regional Perspective on Bioinformatics 22 22 0
Editorship : BMC genomics 61 73 0
MVC Architecture in Bioinformatics web applications and its Java implementation 105 101 0
MPID-T2: a database for sequence–structure–function analyses of pMHC and TR/pMHC structures 448 455 15
Ascaris suum draft genome 261 179 0
Understanding TR binding to pMHC complexes : how does a TR scan many pMHC complexes yet preferentially bind to one 71 96 68
Establishing bioinformatics research in the Asia Pacific 219 220 56
Modeling the bound conformation of Permphigus Vulgaris-associated peptides to MHC Class II DR and DQ Alleles 207 178 27
Bioinformatics education : perspectives and challenges 47 86 84
In silico secretome analysis approach for next generation sequencing transcriptomic data 60 52 0
A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing 224 191 0
MPID-T : database for sequence-structure-function information on T-cell receptor/peptide/MHC interactions 284 350 0
Towards BioDBcore : a community-defined information specification for biological databases 710 1032 153
The Transcriptome analysis of strongyloides stercoralis L3i larvae reveals targets for intervention in a neglected disease 247 432 242
An Analysis of the transcriptome of Teladorsagia circumcincta : its biological and biotechnological implications 34 105 1
Computer-aided vaccine design 299 216 2
Prediction of HLA-DQ3.2ß Ligands : evidence of multiple registers in class II binding peptides 80 103 0
Delineation of modular proteins: Domain boundary prediction from sequence information 22 22 0
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