Macquarie University, Sydney Macquarie University ResearchOnline

Ranganathan, Shoba

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A Workflow for mutation extraction and structure annotation 322 225 0
Gender-enriched transcripts in Haemonchus contortus - predicted functions and genetic interactions based on comparative analyses with Caenorhabditis elegans 373 383 0
A Novel multiplexed immunoassay identifies CEA, IL-8 and prolactin as prospective markers for Dukes' stages A-D colorectal cancers 720 775 141
Oesophagostomum dentatum - potential as a model for genomic studies of strongylid nematodes, with biotechnological prospects 246 218 0
A Proposed minimum skill set for university graduates to meet the informatics needs and challenges of the "-omics" era 110 95 0
SVM-based prediction of caspase substrate cleavage sites 137 213 91
Linking structural features of protein complexes and biological function 269 272 0
Functional annotation of the human chromosome 7 "missing" proteins : a bioinformatics approach 218 243 0
Combining ethnobotany and informatics to discover knowledge from data 322 247 1
The S-star trial bioinformatics course: An on-line learning success 86 80 0
Cloning and molecular characterization of the first aquatic hyaluronidase, SFHYA1, from the venom of stonefish (Synanceja horrida) 31 30 0
Discrete structural features among interface residue-level classes 255 371 133
Comparative genomic analysis of glycoylation pathways in yeast, plants and higher eukaryotes 192 104 0
In silico grouping of peptide/HLA class I complexes using structural interaction characteristics 43 32 0
Advanced in silico analysis of expressed sequence tag (EST) data for parasitic nematodes of major socio-economic importance - Fundamental insights toward biotechnological outcomes 128 114 0
In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda) : comparison of the automated ESTExplorer workflow platform with conventional database searches 89 83 0
Customary medicinal knowledge base (CMKb) 804 833 23
Network analysis of human protein location 130 191 0
Simple re-instantiation of small databases using cloud computing 591 750 179
GIW and InCoB are advancing bioinformatics in the Asia-Pacific 396 380 85
kappa-Hefutoxin1, a Novel Toxin from the Scorpion Heterometrus fulvipes with Unique Structure and Function 199 173 0
Accurate prediction of scorpion toxin functional properties from primary structures 172 163 0
The Transcriptome of Echinostoma caproni adults : further characterization of the secretome and identification of new potential drug targets 402 286 0
Molecular Modeling on the web 11 12 0
Extracting biomarker information applying natural language processing and machine learning 157 355 128
Structural diversity of biologically interesting datasets : a scaffold analysis approach 66 53 0
A common site within factor H SCR 7 responsible for binding heparin, C-reactive protein and streptococcal M protein 101 99 0
Editorial : Critical technologies for bioinformatics 77 68 4
In silico approach to screen compounds active against parasitic nematodes of major socio-economic importance 75 65 0
The Integrin αLβ2 Hybrid Domain Serves as a Link for the Propagation of Activation Signal from Its Stalk Regions to the I-like Domain 65 63 0
Multiple ligand binding sites on domain seven of human complement factor H 32 32 0
Transcriptome analysis reveals pathogenicity and evolutionary history of the pathogenic oomycete Pythium insidiosum 259 186 0
APBioNet: The Asia-Pacific Regional Consortium for Bioinformatics 21 21 0
A Comprehensive assessment of N-terminal signal peptides prediction methods 157 127 0
Helminth secretome database (HSD) : a collection of helminth excretory/secretory proteins predicted from expressed sequence tags (ESTs) 136 293 163
Modeling the structure of bound peptide ligands to major histocompatibility complex 116 97 0
SGS : splicing graph server 102 103 0
A Site for direct integrin αvβ6⋅uPAR interaction from structural modelling and docking 370 359 0
Generation and analysis of a highly complex Γ-retroviral vector integration site dataset from human CD34+ cells using Illumina next-generation sequencing 192 124 0
XdomView: protein domain and exon position visualization 54 54 0
CASVM : web server for SVM-based prediction of caspase substrates cleavage sites 100 85 0
SCORPION2 : a database for structure-function analysis of scorpion toxins 224 278 0
Protannotator : a semiautomated pipeline for chromosome-wise functional annotation of the "missing" human proteome 289 254 0
Advancing standards for bioinformatics activities : persistence, reproducibility, disambiguation and Minimum Information About a Bioinformatics investigation (MIABi) 204 310 101
TranSeqAnnotator : large-scale analysis of transcriptomic data 131 134 0
MGAlignIt: A web service for the alignment of mRNA/EST and genomic sequence 30 31 0
Medicinal plants of New South Wales, Australia 283 201 6
Systems proteomics view of the endogenous human claudin protein family 311 281 0
Massively parallel sequencing and analysis of the Necator americanus transcriptome 246 236 34
Bioinformatics research in the Asia Pacific: a 2007 update 28 28 0
Bioinformatics research in the Asia Pacific : a 2007 update 77 85 25
Advances in translational bioinformatics and population genomics in the Asia-Pacific 171 313 114
Functional and structural implications of the complement factor HY402H polymorphism associated with age-related macular degeneration 127 112 0
OMIA (Online Mendelian Inheritance in Animals) : an enhanced platform and integration into the Entrez search interface at NCBI 519 558 139
De novo peptide sequencing : deep mining of high-resolution mass spectrometry data 490 488 0
DEDB: a database of Drosophila melanogaster exons in splicing graph form 35 31 0
MPID-T₂ : a database for sequence-structure-function analyses of pMHC and TR/pMHC structures 82 67 0
InCoB2014 : Systems Biology update from the Asia-Pacific 86 103 19
Molecular similarity and diversity approaches in chemoinformatics 120 99 0
InCoB2013 introduces Systems Biology as a major conference theme 133 258 128
The hand, foot and mouth disease virus capsid: sequence analysis and prediction of antigenic sites from homology modelling 37 34 0
CMKb : a web-based prototype for integrating Australian Aboriginal customary medicinal plant knowledge 344 216 0
An Ethnobotanical study of medicinal plants used by the Yaegl Aboriginal community in northern New South Wales, Australia 720 1810 973
[Introduction] InCoB2014 : mining biological data from genomics for transforming industry and health 135 138 36
Immunoinformatics 48 47 0
A Comparative structural bioinformatics analysis of inherited mutations in β-D-Mannosidase across multiple species reveals a genotype-phenotype correlation 155 131 2
Characterization of the interaction between heterodimeric αvβ6 integrin and urokinase plasminogen activator receptor (uPAR) using functional proteomics 467 413 0
Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference 92 218 142
An Integrated Transcriptomics and Proteomics Analysis of the Secretome of the Helminth Pathogen Fasciola hepatica PROTEINS ASSOCIATED WITH INVASION AND INFECTION OF THE MAMMALIAN HOST 51 50 0
In silico prediction of immunogenic T cell epitopes for HLA-DQ8 153 214 160
Ecological niche modeling of customary medicinal plant species used by Australian Aborigines to identify species-rich and culturally valuable areas for conservation 234 174 0
Deep insights into Dictyocaulus viviparus transcriptomes provides unique prospects for new drug targets and disease intervention 333 266 0
APBioNet-transforming bioinformatics in the Asia-Pacific region 185 326 146
Structure-based clustering of major histocompatibility complex (MHC) proteins for broad-based T-cell vaccine design 122 111 0
Tandem duplication, circular permutation, molecular adaptation : how Solanaceae resist pests via inhibitors 58 58 24
Quest for missing proteins : update 2015 on Chromosome-Centric Human Proteome Project 2395 2093 0
Genome of the human hookworm Necator americanus 791 662 0
Whole-genome sequence of Schistosoma haematobium 279 274 0
Bioinformatics for immunomics 103 139 0
pDOCK : a new technique for rapid and accurate docking of peptide ligands to major histocompatibility complexes 177 154 57
Unlocking the puzzling biology of the Black Périgord truffle Tuber melanosporum 267 268 1
InCoB2012 Conference : from biological data to knowledge to technological breakthroughs 161 178 66
The Asia-Pacific Regional Perspective on Bioinformatics 24 24 0
Editorship : BMC genomics 69 81 0
MVC Architecture in Bioinformatics web applications and its Java implementation 111 107 0
MPID-T2: a database for sequence–structure–function analyses of pMHC and TR/pMHC structures 521 529 16
Ascaris suum draft genome 304 209 0
Understanding TR binding to pMHC complexes : how does a TR scan many pMHC complexes yet preferentially bind to one 78 108 75
Establishing bioinformatics research in the Asia Pacific 248 241 60
Modeling the bound conformation of Permphigus Vulgaris-associated peptides to MHC Class II DR and DQ Alleles 218 194 35
Bioinformatics education : perspectives and challenges 54 99 92
In silico secretome analysis approach for next generation sequencing transcriptomic data 66 58 0
A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing 265 232 0
MPID-T : database for sequence-structure-function information on T-cell receptor/peptide/MHC interactions 310 376 0
Towards BioDBcore : a community-defined information specification for biological databases 778 1107 163
The Transcriptome analysis of strongyloides stercoralis L3i larvae reveals targets for intervention in a neglected disease 270 465 254
An Analysis of the transcriptome of Teladorsagia circumcincta : its biological and biotechnological implications 45 116 1
Computer-aided vaccine design 328 244 2
Prediction of HLA-DQ3.2ß Ligands : evidence of multiple registers in class II binding peptides 88 111 0
Delineation of modular proteins: Domain boundary prediction from sequence information 27 27 0
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